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I do something similar with FolderSync and SftpGo and have Drafting (vague name) to create and edit notes.
As for version control I just have all of the documents in a git repository on my Code-Server instance which I regularly commit and sync with a local Gitea deployment; nothing special. Though it could be possible to use something like Mgit with a Tasker automation in lieu of a data sync with foldersync/syncthing, I just haven't looked into it in earnest.
That's interesting, it never crossed my mind that I could run git on my phone. But I think I want to look for a way to auto commit every day on my code-server instance, not sure if that's possible at all. Drafting app looks nice, I'll have a try
That should be pretty simple to do with cron and a shell script. Whether you can easily do that within the container depends on who packaged it though.