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Just a possibility: Check if the m2 slot is for disk. There are many boards where there are WiFi exclusive m2 ports. For disks there are also m2 sata and m2 nvme port variations. You need to find out what yours are. Consult your motherboards technical documentation if in doubt. If the BIOS can boot from it, Linux can too.
Edit: that beeing said I never encountered problems with a similar setup ( I boot from Linux on nvme m2 then there is a combined windows /data disk)