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submitted 18 minutes ago* (last edited 15 minutes ago) by zlatiah@lemmy.world to c/science@lemmy.world

Researchers studying ageing disagree on just about everything — including what ageing is, whether it is a disease and when it starts — according to a survey of about 100 scientists working in the field.

[Gladyshev] decided to survey participants at an international conference on ageing in Newry, Maine, in 2022, to better understand the views of those researching the topic. Respondents included early-career researchers, established scientists and industry professionals. The results are described in PNAS Nexus today.

Most researchers are clear in their own minds about what ageing is — but their perspectives don’t align with those of others, says Gladyshev. “People joke in the field that there are more theories than people.” Despite this, Gladyshev says he was surprised by the scale of the problem.

Particular interesting to me since I've met Dr. Gladyshev in-person and have discussed this very problem with him...

The DOI link is broken, so here is the actual cited paper (open access):

Gladyshev VA et al. Disagreement on foundational principles of biological aging. PNAS Nexus (2024). https://academic.oup.com/pnasnexus/article/3/12/pgae499/7913315

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submitted 3 hours ago* (last edited 1 hour ago) by zlatiah@lemmy.world to c/nostupidquestions@lemmy.world

This is definitely a bit of a stupid question... but methinks this happens to a good number of immigrants. Asking because there is a bit of a funny philosophical debate here:

  • Technically the second language is not "native" by virtue of you not growing up with it
  • But you speak it better than your native language, so skill-wise it is "native"

So do you have "native" language skills, or would you consider yourself simply highly "fluent" at the second language?

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87

By "skilled immigrants" I mean people with advance degrees (PhD, MD, ...) holding all types of highly technical and managerial positions.

Asking this because skilled immigrants, at least in theory:

  1. knows, and has first-hand experience of how much bullshit one has to go through to immigrate,
  2. has enough bargaining power to move to another immigration-friendly country,
  3. let's just say that the upcoming US policies don't seem to be friendly to any immigrants at all...

But then US tech and research are supported largely by the same skilled immigrants. So I'm curious how that is supposed to play out...

Sorry this is a bit of a strange question.

P.S.: I'm... not asking for a friend. I've been constantly worried for the past two weeks; I try not to rush to conclusions, so the fact that I'm still worried concerns me. Double quotation marks because in the US it's literally the same government agency that manages all immigrants no matter how they got in the country (highly skilled worker, family of citizen, asylum, literally just crossed the border, ...)

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Criss-cross void (lemmy.world)
submitted 1 week ago by zlatiah@lemmy.world to c/cat@lemmy.world

Description: a black cat with its front legs stretched out and criss-crossed on top of each other.

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submitted 1 week ago by zlatiah@lemmy.world to c/science@lemmy.world

A shared meal, a kiss on the cheek: these social acts bring people together — and bring their microbiomes together, too. The more people interact, the more similar the make-up of their gut microorganisms is, even if individuals don’t live in the same household, a study shows.

The study also found that a person’s microbiome is shaped not only by their social contacts but also by the social contacts’ connections. The work is one of several studies that raise the possibility that health conditions can be shaped by the transmission of the microbiome between individuals, not just by diet and other environmental factors that affect gut flora.

What if we shared our microbiomes under the moonlight

Associated research article (open access): Beghini, F., Pullman, J., Alexander, M. et al. Gut microbiome strain-sharing within isolated village social networks. Nature (2024). https://doi.org/10.1038/s41586-024-08222-1

Another relevant research article cited by the news (also open access): Valles-Colomer, M., Blanco-Míguez, A., Manghi, P. et al. The person-to-person transmission landscape of the gut and oral microbiomes. Nature 614, 125–135 (2023). https://doi.org/10.1038/s41586-022-05620-1

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submitted 2 weeks ago by zlatiah@lemmy.world to c/til@lemmy.world

The nonprofit's scientist co-founder was one of the organizers of a conference I attended, so that's how I learned! From their website:

Darwin’s Ark was founded by two passionate pet lovers—a geneticist and an engineer—who noticed a glaring gap in scientific research. Many people had pets, but surprisingly little research focused on their health and wellbeing.

This sparked the creation of Darwin’s Ark, a nonprofit organization that combines the perspectives of pet parents with the expertise of professional scientists to expand the scale and scope of pet research.

Since then, Darwin’s Ark has helped thousands of pet owners contribute to the scientific understanding of their furry companions. We value pet owners’ insights—you know your animals best—and we believe in the transformative power of community science to drive discovery.

They just launched a new project, Darwin's Cats. And they are seeking out cat owners to submit data on their cats. I believe they also do genetic testing too and the data goes to researchers, instead of some shady startup company

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submitted 3 weeks ago by zlatiah@lemmy.world to c/science@lemmy.world

AlphaFold3 is open at last. Six months after Google DeepMind controversially withheld code from a paper describing the protein-structure prediction model, scientists can now download the software code and use the artificial intelligence (AI) tool for non-commercial applications, the London-based company announced on 11 November.

When AlphaFold3 was first published the code wasn't publicly available (which is pretty bad for computational research), so this is good news that they finally released the code repository.

The GitHub repository: https://github.com/google-deepmind/alphafold3

Note that to request access one needs to sign a form & has to represent a non-commercial entity. If you receive access then allegedly you can easily run AlphaFold3 via docker

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submitted 3 weeks ago by zlatiah@lemmy.world to c/asklemmy@lemmy.world

As the title goes... Per community rules, I'd appreciate it if we keep politics out of this discussion

[-] zlatiah@lemmy.world 17 points 3 weeks ago

So this is a bit counter to the news article's point, and apologies for linking to Reddit... but there has been a fairly hot post on the subreddit r/USCIS. A practicing immigration attorney was sharing some thoughts on how feasible the promises are https://www.reddit.com/r/USCIS/comments/1glflxy/so_what_now_an_immigration_attorney_perspective/. Some quotes:

IMO, no-- the economy makes way too much money from DACA folks. I do believe that they will dangle it like a carrot to appease right-wing voters. Major corporations employ DACAmented folks. The SSN from work permits have allowed more tax revenue to come in. Too much is at stake. Legally, the legal arguments at the courts surrounding DACA involve constitutional rights, which themselves aren't going anywhere anytime soon. It's honestly just a topic that is often talked about, but hardly understood by many.

I want to put this into perspective. There are 11 million undocumented immigrants in the US. Currently, DHS has about 92,000 officers, and ICE has about 21,000 officers. It is asinine to try to achieve this.

Let's say it actually does begin and people are getting rounded up. Guess what? Not all undocumented folks are just undocumented-- many have TPS, pending asylum applications, pending T/U Visas, and work permits (see my point regarding #1). Unless a migrant has an expedited removal (not likely), DHS/ICE still needs to process each deportee, assign them A#s, and follow basic procedures. If they don't? That's a very easy way to reverse a deportation order. It's the equivalent of convicting someone of murder using a confession made under a very obvious 4/5th amendment violation. Slam dunk case.

Oh, and you know who has to handle all of these deportation cases? Federal DHS attorneys. They're already overworked, and they tend to exercise discretion. If no discretion, the overworked ones tend to gloss over cases and provide weak arguments. Only major attention is paid to serious crimes. You'd be surprised the amount of times DHS attorneys have gotten my clients' names wrong or made procedurally embarrassing typos.

... assuming the administration still follows basic social contracts, that is. If the Trump administration actually uses the military to forcefully enforce mass deportations, then I feel the US is going to be fucked on so many different more levels... and there would be way more to worry than just the deportations

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submitted 3 weeks ago by zlatiah@lemmy.world to c/science@lemmy.world

When a dog shakes water off its fur, the action is not just a random flurry of movements — nor a deliberate effort to drench anyone standing nearby.

This instinctive reflex is shared by many furry mammals including mice, cats, squirrels, lions, tigers and bears. The move helps animals to remove water, insects or other irritants from hard-to-reach places. But underlying the shakes is a complex — and previously mysterious — neurological mechanism.

Now, researchers have identified the neural circuit that triggers characteristic ‘wet dog’ shaking behaviour in mice — which involves a specific class of touch receptors, and neurons that connect the spinal cord to the brain. Their findings were published in Science on 7 November.

“The touch system is so complex and rich that [it] can distinguish a water droplet from a crawling insect from the gentle touch of a loved one,” says Kara Marshall, a neuroscientist at Baylor College of Medicine in Houston, Texas. “It’s really remarkable to be able to link a very specific subset of touch receptors to this familiar and understandable behaviour.”

Research article was featured on the cover of this issue of Science, with a glorious picture of a brown bear doing the "wet dog shake" (https://www.science.org/toc/science/current)

Research article: https://doi.org/10.1126/science.adq8834

Please let me know if there is paywall

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Disease: /LOSS (lemmy.world)

Brought to you by PubTator 3.0: an AI-powered literature resource for unlocking biomedical knowledge

(This is actually tooth loss but it was annotated as "/LOSS" in the data. Also this is not a paper on tooth loss)

https://www.ncbi.nlm.nih.gov/research/pubtator3/publication/30090999?text=@DISEASE_Tooth_Loss

[-] zlatiah@lemmy.world 16 points 1 month ago

This is the study they were referring to: https://doi.org/10.1016/j.jaci.2015.07.040

C-section babies have slightly higher risks of several diseases related to immune system function, and the hypothesis is that it is because these babies have slightly less developed immune systems

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submitted 1 month ago by zlatiah@lemmy.world to c/science@lemmy.world

Feeding a baby born by caesarean section milk containing a tiny bit of their mother’s poo introduces beneficial microbes to their gut, according to a clinical trial. The approach might one day help to prevent diseases during childhood and later in life.

Some studies show that babies born by c-section, rather than vaginal birth, have a higher risk of asthma, inflammation of the digestive system and other diseases associated with a dysfunctional immune system... Experiments have attempted to compensate for that by swabbing babies born by c-section with microbes from their mother’s vagina or giving them these microbes orally, a practice known as ‘vaginal seeding’. But this technique has had limited success, because vaginal microbes, scientists have learnt, cannot effectively colonize infants’ guts...

Helve and his colleagues have been pioneers in testing whether faecal transplants can instead improve the health of a baby’s microbiome. In their latest trial, which recruited women scheduled for a c-section at the Helsinki University Hospital, the researchers mixed a fluid containing 3.5 milligrams of a mother’s poo into milk and gave the concoction to the corresponding baby. They did this for 15 babies during their first feed. Another 16 babies received a placebo.

An important next step in the field, Shao says, would be to pinpoint the specific maternal gut microbes that are most likely to transmit to and colonize their babies’ guts. Shao asks: “If these species do exist across human populations, wouldn’t it be more effective and safer” to give newborns a laboratory-made transplant that’s guaranteed to be pathogen-free?

"This is the shit"

But seriously don't try this at home. Fecal matters can contain pathogens, in fact 54 of the 90 women screened were excluded because of detected pathogens. If this goes well maybe ppl can make some type of lab-made probiotics for C-section babies or stuff

The abstract presented at IDWeek 2024: https://idweek2024.eventscribe.net/index.asp?presTarget=2886841

[-] zlatiah@lemmy.world 47 points 1 month ago

This again??

This time once archive.org is back online again... is it possible to get torrents of some of their popular data storage? For example I wouldn't imagine their catalog of books with expired copyright to be very big. Would love a community way to keep the data alive if something even worse happens in the future (and their track record isn't looking good now)

[-] zlatiah@lemmy.world 12 points 1 month ago* (last edited 1 month ago)

I don't believe anyone mentioned this yet so... here goes nothing, there is a suspicion that this is due to A/B testing

This is a bug report from the Invidious project; this is back in June 6 (so four months ago), but the hoster of a fairly large instance noted a very bizarre error message on the Invidious project...

Conclusion is that Youtube is very likely rolling out A/B testing of requiring all clients to login before viewing videos

Refreshing will probably work considering this is most likely result of an A/B test, but unfortunately I don't see a way of this problem going away

[-] zlatiah@lemmy.world 13 points 1 month ago

I genuinely don't know... there doesn't seem to be any ongoing discussion of who or why are these people targeting IA. There are other people who are trying to rescue data stored on IA

Hope this would be over soon...

[-] zlatiah@lemmy.world 12 points 1 month ago* (last edited 1 month ago)

Oh my... I had a slightly similar incident. New phone number, had a bunch of random strangers texting me (some even calling!) asking for Ethan. My name is not Ethan, I didn't know who Ethan is

No idea what was on my mind back then, but I somehow got the contact info of this mysterious Ethan, called him (hilarity ensued since he got a call from someone on his contact list named "Me"), confirmed his up-to-date number, and promptly referred everyone looking for Ethan to the real person for over a year...

Life is strange sometimes

[-] zlatiah@lemmy.world 29 points 1 month ago

A bit off topic... But from my understanding, the US currently doesn't have a single federal agency that is responsible for AI regulation... However, there is an agency for child abuse protection: the National Center on Child Abuse and Neglect within Department of HHS

If AI girlfriends generating CSAM is how we get AI regulation in the US, I'd be equally surprised and appalled

[-] zlatiah@lemmy.world 17 points 1 month ago

Not a perfectly relevant xkcd but

(From https://what-if.xkcd.com/21/)

[-] zlatiah@lemmy.world 11 points 1 month ago
  • A privacy-respecting mail service: I use mailbox.org since it follows email standards, but I think many ppl like Proton mail/Tutanota. Recommend because they are privacy-respecting, and self-hosting email is way too difficult
  • More of a yearly subscription per-se, but a personal domain from any domain registrar. Recommend because why not? There are so many cool things one can do with a domain: custom email, your own blog, professional website for job, ...
  • A VPS from Linode (or any reliable provider). Recommend because some things are better done on a VPS... and I want a public-facing IP that is not directly from my bedroom
  • I used to have subscriptions to the local arcade. Recommend because I basically get cardio workout on the DDR machine (and it costs less than a gym. And easier to cancel)
[-] zlatiah@lemmy.world 34 points 2 months ago

This got me into a way bigger rabbit hole than I remembered... The person is not officially "fired" since you cannot fire a tenured, distinguished professor and a former department head, but I suspect she was persuaded to leave. The incident is quite wild, I was just a random undergrad hired to do lab tests so I only knew some details.

This is about Dr. Connie Weaver, professor emeritus and former department head at Purdue's Department of Nutrition Sciences (her ORCiD). She was known for nutrition research where the institution recruits adolescents summer-camp style (similar to a clinical trial), and in 2017 she started to lead a multi-year (lasted one month before it was shut down) study on low-sodium diets in adolescents, Camp DASH. Supposed to be a gold-standard diet study... close to 10 million dollars of NIH money on the line too.

And then things went off the rail. The operation tried to cut a lot of corners: pretty much all of the employees were undergraduates who couldn't find other things to do for the summer, training was minimal or nonexistent, and the employees-to-camper ratio was very, very low... oddly similar to the recent MrBeast incident where participation oversight seems to be very bad.

This then led to sexual harassment, abuse, etc... one poor girl's nude was shared online, probably more cases of sexual assault, several adolescents got into serious fights with each other, and from what I've heard some of the undergrads who were on supervisory roles were also injured. Several lawsuits were filed, the university stepped in and stopped the study (I just remembered them stop scheduling me to work in July and was wondering what went wrong lol), the issue got elevated to the university president, and more lawsuits...

Obviously tenure means someone should be protected from being terminated at-will like most employment contracts. So the reason I have my suspicion is... Dr. Weaver became a professor emeritus not long after the incident, but is now somehow still publishing work while working from... San Diego State University? Doesn't seem like someone who retired on their own will to me.

If you are interested in the full detail... here are some news articles on this incident. Exponent is Purdue's student-run newspaper

[-] zlatiah@lemmy.world 53 points 2 months ago* (last edited 2 months ago)

The elites don't want you to know but "[y]ou may be able to get Invidious working on residential IP addresses (like at home)"

Following their guide gives a local Invidious client, don't forget to 1) copy their production compose file instead of using the one on git and 2) change "hmac_key"... from my experience setting up cron (crontab -e) to restart the docker container once per day keeps the Invidious docker healthy


Edit: here are some alternatives for popular Google services. Not in anyway related to the above (smirk

  • Google itself: SearXNG (try searx.be first), one of the easiest services to self-host
  • Gmail/calendar: a lot of people seem to swear by one of Proton Mail, Tutanota or Mailbox.org. Self-hosting is possible but challenging
  • Google Drive: You mean Nextcloud?
  • Google maps: Organic Maps is actually getting pretty good now
  • Google Chrome: at the very least there is Chromium... obviously there is Firefox and Firefox forks (such as Librewolf), as well as other smaller browsers
  • Google Play: F-Droid hosts a lot of FOSS stuff, and there are alternative ways to access Play (such as Aurora Store)
  • Android: a bit more difficult... but there is LineageOS, GrapheneOS, and similar stuff
[-] zlatiah@lemmy.world 32 points 2 months ago

clear because apparently I am too scatterbrained to comprehend more than one full page of text in the terminal

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zlatiah

joined 2 months ago